| Day 1 - October 4, 2023, Wednesday | ||||
| Event | Time (GMT+3) | Speaker | Title | |
| Start | End | |||
| Welcome & Coffee | 12.30 | 13.30 | ||
| Opening Lecture | 13.30 | 14.00 | Cosimo Posth (Tübingen University) | |
| EMBO - Workshop - Course 1 | 14.00 | 14.30 | İsmail Kudret Sağlam / Ogün Adebali | Probabilistic Models in Population Genetics |
| EMBO - Workshop - Course 2 | 14.30 | 15.00 | İsmail Kudret Sağlam / Ogün Adebali | Computing genotype likelihoods on low/medium coverage data |
| Coffee Break | 15.00 | 15.30 | ||
| EMBO - Workshop - Course 3 | 15.30 | 16.00 | İsmail Kudret Sağlam / Ogün Adebali | Genetic distances and population structure |
| EMBO - Workshop - Course 4 | 16.00 | 16.30 | İsmail Kudret Sağlam / Ogün Adebali | Coalescent models for determining diversity statistics |
| Closing Remarks | 16.30 | 17.00 | Ogün Adebali | |
| Day 2 - October 5, 2023, Thursday | |||||
| Event | Time (GMT+3) | Speaker | Session | Title | |
| Start | End | ||||
| Registration | 08.00 | 08.45 | |||
| Welcome Speech | 08.45 | 09.00 | |||
| Opening Talk | 09.00 | 09.15 |
Müge Yemişçi Özkan (Hacettepe University) Head of Graduate School of Health Sciences |
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| Keynote Talk | 09.15 | 10.15 | Christine Orengo (University College London) | ||
| Coffee Break | 10.15 | 10.30 | |||
| Invited Talk | 10.30 | 11.00 | Urartu Şeker (Bilkent University) |
Systems Biology & Network Biology (Moderator: Ceren Özkul Koçak)
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| Selected Talk 1 | 11.00 | 11.15 | Ahmet Hinçer (Bilkent University) | Creation of Synthetic 5’ UTR Library by Analyzing Differential Expression in Cancer Versus Healthy Breast Cells | |
| Selected Talk 2 | 11.15 | 11.30 | Atilay Ilgun (Gebze Technical University) | Functional Specificity of Astrosyte Subtypes in Alzheimer’s Disease: A Multi-Omic Approach by Mapping Single Nuclei Data on Protein Interaction Networks | |
| Selected Talk 3 | 11.30 | 11.45 | Cansu Dinçer (Wellcome Sanger Institute) | Inferring effective cancer drug combination therapies using network based multi-omics data integration | |
| Lunch Break | 11.45 | 13.00 | |||
| Keynote Talk | 13.00 | 14.00 | Cosimo Posth (Tübingen University) | ||
| Invited Talk | 14.00 | 14.30 | Zeki Kaya (Middle East Technical University) |
Genomics & Ancient Genomics (Moderator: Nurten Akarsu) |
Tracing the crop domestication and vegetation past in the Gediz Valley with ancient DNA approach |
| Selected Talk 4 | 14.30 | 14.45 | Emrah Kırdök (Mersin University) | Identification of oral pathogens and dietary components from three stone-age chewed pitches | |
| Selected Talk 5 | 14.45 | 15.00 | Gün Kaynar (Bilkent University) | ECOLE: Learning to call copy number variants on whole exome sequencing data | |
| Selected Talk 6 | 15.00 | 15.15 | Aylin Bircan (Sabanci University) | Evolutionary history of Calcium-sensing receptors sheds light into hyper/hypocalcemia-causing mutations | |
|
Poster Session Coffee break |
15.15 | 16.15 | |||
| Selected Talk 7 | 16.15 | 16.30 | Büşra Tayhan (Sabanci University) |
Computational Structural Biology (Moderator: Çağdaş Son) |
Conformational Effects of Calcium Stripping from Calmodulin |
| Selected Talk 8 | 16.30 | 16.45 | Meryem Eren (Koç University) | Investigating the Impact of Phosphorylation and C-Tail Interactions on AKT Dynamics | |
| Selected Talk 9 | 16.45 | 17.00 | Rumeysa Hilal Çelik (Niğde Ömer Halisdemir University) | Dynamics of Synthetic Polymer Scaffolds Supported With Carbonic Nanoparticle | |
| Gala Dinner | 19.30 | Vişnelik ODTÜ MD Tesisleri | *Complementary | *No extra fee required | |
| Day 3 - October 6, 2023, Friday | |||||
| Event | Time (GMT+3) | Speaker | Session | Title | |
| Start | End | ||||
| Registration | 08.00 | 09.00 | |||
| Main Sponsor Talk | 09.00 | 09.30 | Genera | ||
| Keynote Talk | 09.30 | 10.30 | Chris Evelo (Maastricht University) | ||
| Coffee Break | 10.30 | 10.45 | |||
| Invited Talk | 10.45 | 11.15 | Nilüfer Rahmioğlu Ramiz (University of Oxford) |
Omics & Spatial Technologies (Moderator: Arda Çetinkaya) |
Understanding the genetic basis of endometriosis and need for diverse ancestry studies |
| Selected Talk 10 | 11.15 | 11.30 | Gülden Olgun (Hacettepe University) | NoRCE Shiny App - Shiny App For Noncoding RNA Set Cis Annotation and Enrichment | |
| Selected Talk 11 | 11.30 | 11.45 | Arda Söylev (Heinrich-Heine University Dusseldorf) | SVarp: Structural Variation Discovery in Pangenomes | |
| Selected Talk 12 | 11.45 | 12.00 | Kaan ARICI (Middle East Technical University) | Inferring Hidden Connections in Omics Data via pyPARAGON: A Hybrid Approach for Context-Specific Interpretation | |
| Lunch Break | 12.00 | 13.00 | |||
| Invited Talk | 13.00 | 13.30 | Erdal Coşgun (Microsoft) |
Machine/Deep Learning Applications in Bioinformatics (Moderator: Tunca Doğan) |
Genomics Data Science Applications on Cloud |
| Selected Talk 13 | 13.30 | 13.45 | Büşra Oğuzoğlu (Boğaziçi University) | Graph-Based Representation of Protein Sequences Enriched with Protein Words for Pathogen-Host Interaction Prediction | |
| Selected Talk 14 | 13.45 | 14.00 | Burakcan Izmirli (Hacettepe University) | DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling | |
| Selected Talk 15 | 14.00 | 14.15 | Sina Barazandeh (Bilkent University) | RNAGEN: A generative adversarial network-based model to generate synthetic RNA sequences to target proteins | |
| Poster Session and Coffee Break | 14.15 | 15.15 | |||
| Main Sponsor Talk | 15:15 | 15:45 | Qiagen | ||
| Invited Talk | 15:45 | 16:00 |
Ece Akhan Güzelcan (Hacettepe Üniversitesi) |
Health Informatics (Moderator: Yeşim Aydın Son) |
The importance of FAIRification of biological data |
| Selected Talk 16 | 16.00 | 16.15 | Gülsüm Kaya (University of Health Sciences) | Quantification of prophylactic antibiotics in breast milk and the meconium microbiome in neonates delivered vaginally or by cesarean section | |
| Selected Talk 17 | 16.15 | 16.30 | Maral Dicle Maral (Bogazici University) | A diverse and detailed mammography dataset for developing computer-assisted detection models for breast cancer | |
| Award Ceremony | 16.30 | 16.45 | |||
| Closing Remarks | 16.45 | 17.00 | |||